Day: 13 November 2026

Equine Airway Endoscopy and BAL: What the Findings Mean

Airway endoscopy and bronchoalveolar lavage (BAL) are the two tools many equine vets reach for when a horse has a cough, a nasal discharge, or poor performance. The scope shows you the airway. The lavage fluid shows you the cells. Each finding on its own can mislead, and the real skill is reading them together with the history.

This guide covers how those findings are interpreted, using the 2016 ACVIM consensus statement (Couëtil et al., 2016), and what to ask when you’re choosing an equine scope. It doesn’t cover how to perform a BAL or pass a scope. That belongs in a clinical reference or hands-on instruction. Here we stay with what the findings mean.

A quick vocabulary update

The 2016 consensus statement grouped inflammatory airway disease (IAD) and recurrent airway obstruction (RAO, or heaves) under the term “equine asthma,” with IAD at the mild end and RAO at the severe end (Couëtil et al., 2016). In today’s nomenclature:

  • IAD is now mild to moderate equine asthma (mEA).
  • RAO, or heaves, is now severe equine asthma (sEA).

You’ll still see the old terms in older papers and in conversation, so it helps to know both. The panel was careful about one point: the new classification shouldn’t be read as a continuum in which every horse with IAD goes on to develop RAO. They also noted that the majority of horses with IAD appear to recover (Couëtil et al., 2016).

How mild and severe asthma tend to present

The statement describes severe asthma, or heaves, as marked lower airway inflammation and obstruction with frequent coughing, increased respiratory effort at rest, and exercise intolerance. Signs and obstruction can be reversed with corticosteroids, bronchodilators, or a change in environment, and it principally affects horses over 7 years of age (Couëtil et al., 2016). Mild to moderate asthma can affect horses of any age, although it is more commonly reported in young horses (Couëtil et al., 2016). Horses with similar presentations, such as chronic cough, excess mucus, or poor performance, can vary widely in severity (Couëtil et al., 2016), which is why the findings from the scope and the lavage matter.

What the consensus statement looks at

The statement builds a diagnosis from several findings read together with the horse’s history and clinical signs. Two of them come directly from the work you do with a scope: the endoscopic mucus score and the BAL fluid cytology (Couëtil et al., 2016). For severe asthma, the case definition also includes evidence of airflow limitation that reverses with a bronchodilator or an environmental change, and airway hyperresponsiveness (Couëtil et al., 2016).

Endoscopy: the mucus score

On airway endoscopy, the consensus statement identifies excess mucus in the tracheobronchial tree as a diagnostic finding for mild to moderate asthma. The thresholds differ by type of horse, on a 0 to 5 scale (Couëtil et al., 2016):

  • Racehorses: a mucus score of 2 or higher out of 5
  • Sport and pleasure horses: a mucus score of 3 or higher out of 5

Mucus matters for performance. The statement notes that poor racing performance in racehorses, and reduced willingness to perform in show-jumpers and dressage horses, are associated with excess tracheal mucus, although an association with tracheal wash neutrophilia has not been detected (Couëtil et al., 2016).

For severe asthma, the statement says a combination of pronounced BAL neutrophilia (neutrophils above 25%) and tracheal mucus accumulation (a grade above 2 out of 5) may indicate it, alongside severe exercise intolerance (Couëtil et al., 2016).

BAL cytology: the numbers

The consensus statement gives reference values for healthy horses and criteria for the two categories. These are based on studies that used a 250 mL infusion volume (Couëtil et al., 2016).

NeutrophilsMast cellsEosinophils
Healthy horses5% or less2% or less1% or less
Mild to moderate asthmaabove 10%, orabove 5%, orabove 5%
Severe asthmaabove 25%typically below 2%typically below 1%

For mild to moderate asthma, one or more of the three thresholds is enough (Couëtil et al., 2016). The healthy-horse total nucleated cell count in the statement is 530 cells per microliter or less (Couëtil et al., 2016). The Merck Veterinary Manual’s page on asthma in horses shows the same cytology ranges in a table (Merck Veterinary Manual, n.d.), which is a handy free reference.

Values in between are equivocal

The statement says results between the healthy range and the asthma thresholds are likely technique dependent (Couëtil et al., 2016). It also notes that differences in method, including infusion volume, prevent definitive cut-offs, which is why the reference values are tied to the 250 mL protocol (Couëtil et al., 2016). Interpret the numbers against your own technique and the horse’s signs, not as a standalone diagnosis.

Endoscopy and BAL don’t always agree

It’s tempting to expect a high mucus score to go hand in hand with a high neutrophil percentage. The consensus statement points out that tracheal mucus accumulation correlated positively with BAL neutrophil percentage in some studies but not in others, and negatively with BAL mast cell percentage in at least one (Couëtil et al., 2016). In other words, a horse can have a convincing mucus score and a modest BAL, or the reverse. That’s one reason the statement treats these as separate pieces of evidence.

The statement also links abnormal BAL cytology with poor performance and exercise intolerance in both racehorses and non-racehorses (Couëtil et al., 2016).

Reading a result: an illustration

The following is a hypothetical example, not a real case, to show how the thresholds work. Suppose a sport horse has a history of cough and reduced performance, an endoscopic tracheal mucus score of 3 out of 5, and a BAL with 12% neutrophils taken using a 250 mL infusion. Against the consensus criteria, both findings meet the thresholds for mild to moderate asthma (mucus 3 or higher in a sport horse, neutrophils above 10%) (Couëtil et al., 2016). If the same horse had 7% neutrophils, that would fall in the equivocal range, and the mucus score and the history would carry more of the weight.

What to look for in an equine scope

The scope doesn’t change the thresholds above, but it determines what you can see and whether you can see it consistently. When you’re comparing equine endoscopes, ask about:

  • Working length. Equine and large animal endoscopes are longer than small animal scopes. Ask which length suits the procedures you actually do.
  • Insertion tube diameter. It has to fit the airway you’re working in.
  • Instrument channel size. It determines which accessories you can pass.
  • Field of view and image quality. You’ll be judging mucus on the screen, so a clear, well-lit image matters.
  • Image and video recording. Saved images let you document findings and compare over time.
  • Processor compatibility and ruggedness. A barn is hard on equipment. Ask how the scope and processor handle dust, moisture, and travel.
  • Reprocessing. Ask for the manufacturer’s cleaning and disinfection instructions before you buy. Our endoscope cleaning and reprocessing guide covers the principles.

Our Aohua line includes large animal endoscopes. The VET-FHD33 veterinary video endoscope is listed with a 3,300 mm working length, a 9.8 mm insertion tube, a 2.8 mm channel, and a 145° field of view. The OR-160 touch screen video processor works with both flexible and rigid scopes. You can browse the full range on our veterinary endoscopes page, and see our posts on the top veterinary endoscopes, what to know before investing in one, and endoscopy for diagnostics and treatment.

Which length and diameter suit lower-airway work in your patients is a clinical question. Ask the manufacturer and a colleague who does it regularly.

A short checklist for your next case

  • Is the history compatible, such as cough, nasal discharge, or reduced performance?
  • Did you record a tracheal mucus score, and does it meet the threshold for this type of horse?
  • Do you know your BAL volume and technique, so the numbers can be compared with the 250 mL reference values?
  • Are the cytology results clearly abnormal, clearly normal, or in the equivocal range?
  • Does the picture fit mild to moderate or severe asthma, or does it point somewhere else?
  • Is your scope cleaned, disinfected, dried, and stored according to the manufacturer’s instructions before the next horse?

Service and support

Our repair team provides phone support and repairs, our inspection service covers preventative maintenance, and the Just Works service plan puts it on a schedule. Financing is available, and you can request a quote for any scope.

Frequently asked questions

What is the new name for IAD in horses? Mild to moderate equine asthma. Recurrent airway obstruction (RAO, or heaves) is now called severe equine asthma (Couëtil et al., 2016).

What endoscopic mucus score suggests equine asthma? The 2016 ACVIM consensus statement identifies excess tracheobronchial mucus as a score of 2 or higher out of 5 in racehorses and 3 or higher out of 5 in sport and pleasure horses (Couëtil et al., 2016).

What BAL cytology is normal in horses? Based on a 250 mL infusion, the consensus statement gives healthy reference values of neutrophils 5% or less, eosinophils 1% or less, and mast cells 2% or less (Couëtil et al., 2016).

What BAL neutrophil percentage indicates severe equine asthma? Severe asthma typically shows neutrophils above 25%. The consensus statement says a combination of pronounced neutrophilia and an endoscopic mucus grade above 2 out of 5, with severe exercise intolerance, may indicate it (Couëtil et al., 2016).

Can BAL results be borderline? Yes. Values between the healthy range and the asthma thresholds are equivocal and likely depend on technique, so interpret them with the horse’s history and clinical signs (Couëtil et al., 2016).

Do endoscopy and BAL always agree? No. The consensus statement notes that tracheal mucus correlated with BAL neutrophil percentage in some studies but not others (Couëtil et al., 2016).

Does the consensus statement apply to every BAL technique? Not exactly. The reference values are based on studies that used a 250 mL infusion volume, and the statement notes that differences in method prevent definitive cut-offs (Couëtil et al., 2016).


References

Couëtil, L. L., Cardwell, J. M., Gerber, V., Lavoie, J.-P., Léguillette, R., & Richard, E. A. (2016). Inflammatory airway disease of horses—Revised consensus statement. Journal of Veterinary Internal Medicine, 30(2), 503–515. https://doi.org/10.1111/jvim.13824

Merck Veterinary Manual. (n.d.). Asthma in horses. Merck & Co. Retrieved November 14, 2026, from https://www.merckvetmanual.com/respiratory-system/respiratory-diseases-of-horses/asthma-in-horses


Veterinary Endoscope Cleaning and Reprocessing Guide

A flexible endoscope is only as safe as the last time it was reprocessed. It goes into the airway, the GI tract, or the urinary tract. It has narrow channels you can’t see into. It can’t go in the autoclave. That makes cleaning and disinfection the part of endoscopy that is easiest to get wrong and hardest to notice when it’s wrong.

Most of us learned to pass a scope long before anyone walked us through reprocessing it. The procedure gets the attention, and the cleanup gets whoever is free at the end of a long day. This guide covers the principles, the order of the steps, and the questions to ask when you buy a scope or train your team.

It’s a general overview, not a replacement for the instructions that came with your scope. Those always come first.

A note on where this guidance comes from

The most detailed guidance on reprocessing endoscopes is the CDC’s Guideline for Disinfection and Sterilization in Healthcare Facilities (Rutala et al., 2008). It’s written for human healthcare. We didn’t find an equivalent national standard written for veterinary practice, so we use the CDC guideline as a benchmark. Your scope manufacturer’s instructions for use govern your specific scope, and your provincial veterinary regulator may have requirements of its own.

Why flexible endoscopes need special attention

The CDC classifies endoscopes that touch mucous membranes as semicritical items. Its guidance is that these need, at a minimum, high-level disinfection after each patient (Rutala et al., 2008). Heat-sensitive endoscopes, such as gastrointestinal endoscopes and bronchoscopes, must be properly cleaned and given at least high-level disinfection after each use (Rutala et al., 2008).

Two reasons make flexible scopes a special case. First, because of the body cavities they enter, they pick up high levels of microbial contamination every time they’re used (Rutala et al., 2008). Second, they can’t be steam sterilized, so you’re relying on a chemical or low-temperature process to finish the job.

It helps to know what high-level disinfection means. The CDC says it can be expected to destroy all microorganisms, although when high numbers of bacterial spores are present, a few spores might survive (Rutala et al., 2008). That’s why the step before it matters so much.

Step 0: Leak test every time

The CDC recommends testing each flexible endoscope for leaks as part of every reprocessing cycle (Rutala et al., 2008). It also recommends leak testing before the scope is immersed (Rutala et al., 2008). If a scope fails the leak test, take it out of clinical use and have it repaired.

The reason is simple. A leak lets fluid reach parts of the scope that were never meant to get wet, which can damage it and make proper reprocessing impossible. A scope that passes a leak test on Monday can fail on Thursday, which is why the test belongs in every cycle and not just the first one.

The five steps

The CDC describes endoscope disinfection with a liquid chemical agent as five steps, after leak testing (Rutala et al., 2008).

1. Clean. Mechanically clean the inside and outside of the scope, including brushing the internal channels and flushing each channel with water and a detergent or enzymatic cleaner (Rutala et al., 2008). Cleaning is necessary before both manual and automated disinfection, and the CDC notes that it reduces microbial contamination by 4 to 6 log10 (Rutala et al., 2008). Disinfectant can’t reach what debris is still covering, so a skipped or rushed cleaning step undermines everything after it.

2. Disinfect. Fully immerse the scope in a high-level disinfectant or chemical sterilant, making sure all channels are filled (Rutala et al., 2008).

3. Rinse. Rinse the scope and all channels with high-quality water (Rutala et al., 2008). The CDC lists sterile water, filtered water, or tap water that meets clean water standards as options, depending on the setting.

4. Dry. Rinse the insertion tube and channels with alcohol, and dry them with forced air before storage (Rutala et al., 2008). The CDC identifies drying as essential to greatly reduce the chance of the scope being recontaminated by waterborne organisms (Rutala et al., 2008).

5. Store. Store the scope in a way that protects it from damage and contamination and promotes drying (Rutala et al., 2008). The CDC’s example is hanging it vertically.

Use the contact times, concentrations, and products your scope’s manufacturer specifies. This article doesn’t give them, because they vary by product and by scope.

Manual or automated reprocessing

Some practices clean and disinfect by hand. Others use an automated endoscope reprocessor, often called an AER. If you use one, the CDC says to place the scope in the reprocessor and attach all the channel connectors according to the AER manufacturer’s instructions, so that every internal surface is exposed to the disinfectant (Rutala et al., 2008). A reprocessor doesn’t replace the cleaning step. The CDC is clear that cleaning is necessary before automated disinfection too (Rutala et al., 2008).

If the scope manufacturer’s instructions and the reprocessor manufacturer’s instructions disagree, the CDC advises comparing them and resolving the conflict by contacting both manufacturers (Rutala et al., 2008).

Choosing chemicals and methods

  • Use an approved high-level disinfectant or sterilant. Choose one authorized in your country and approved by your scope’s manufacturer. The CDC advises avoiding any chemical the manufacturer warns against, because it can damage the scope (Rutala et al., 2008).
  • Soaking agents are not all equal. AAHA’s overview of sterilization methods notes that most agents used for soaking are high-level disinfectants, not true sterilization agents. The one exception it names is endoscopy equipment that doesn’t tolerate autoclaving, where high-level disinfectants like glutaraldehyde may be used (American Animal Hospital Association [AAHA], n.d.).
  • Ethylene oxide is uncommon for flexible endoscopes. The CDC notes it requires long processing and aeration time (about 12 hours) and is a potential hazard to staff and patients (Rutala et al., 2008).
  • Plasma sterilization is another option for some heat-sensitive devices. AAHA’s overview describes hydrogen peroxide gas plasma as a faster, non-carcinogenic alternative that needs no venting, but it can’t be used with wood, paper, linen, or gauze. It describes air plasma as having a four-hour cycle (AAHA, n.d.). Whether either is right for your scope depends on the manufacturer.

Drying and storage deserve their own attention

Drying is the step teams cut when the day runs late. The CDC treats it as one of the most important, because moisture left in a channel gives organisms a place to grow (Rutala et al., 2008). Build it into the routine: the alcohol flush, then forced air, then hanging the scope vertically in a space that protects it from damage and contamination.

People and paperwork

The CDC recommends giving anyone assigned to reprocess endoscopes device-specific reprocessing instructions, so they know how to clean and disinfect that exact scope (Rutala et al., 2008). A procedure written for one scope may not fit another. In practice that means:

  • A written, scope-specific procedure kept where reprocessing happens
  • Training for every team member who reprocesses, with a refresher when a new scope arrives
  • A log for each cycle
  • Optionally, random bacterial surveillance cultures of processed scopes, which the CDC says facilities can consider as part of a quality program (Rutala et al., 2008)

A log you can adapt

Consider recording these fields for each cycle. Adjust them to your manufacturer’s instructions:

  • Date and time
  • Scope name and serial number
  • Patient or procedure (according to your records policy)
  • Leak test result (pass or fail)
  • Cleaning completed (initials)
  • Disinfectant or method used, and the contact time recorded
  • Rinse and dry completed (initials)
  • Storage location
  • Name of the team member who reprocessed

Where reprocessing goes wrong

Based on the guidance above, these are the points to watch:

  • Skipping the leak test because the scope looked fine
  • Disinfecting before cleaning, or rushing the brushing and flushing
  • Using a chemical the manufacturer warns against, which can damage the scope
  • Not drying the channels, then storing the scope while it’s still damp
  • Relying on a general procedure instead of device-specific instructions
  • Continuing to use a scope that failed a leak test

What to ask before you buy a scope

  • Can I get the manufacturer’s reprocessing instructions before I buy?
  • Which cleaning agents and disinfectants are approved for this scope, and which are not?
  • Is a leak tester included, and what does it fit?
  • Which low-temperature sterilization methods, if any, does the manufacturer approve?
  • What does the warranty cover, and does it cover damage from fluid ingress?
  • Is a loaner available if the scope needs repair?

We carry Aohua veterinary endoscopes, including the VET-6028R video endoscope (1,500 mm working length, 6.0 mm distal end, 2.8 mm instrument channel) and the OR-160 touch screen video processor. You can see everything on our veterinary endoscopes page. For more on choosing a scope, see Top Things to Know Before Investing in a Veterinary Endoscope, Top 5 Veterinary Endoscopes, and our overview of endoscopy for diagnostics and treatment.

When a scope fails its leak test, or something looks wrong

Don’t use it. Our repair team provides phone support and repairs, our inspection service covers preventative maintenance, and the Just Works service plan puts it on a schedule. Financing is available, and you can request a quote for any scope or accessory. For the instruments that can be steam sterilized, see our guide to choosing a veterinary autoclave.

Frequently asked questions

Do I need to leak test my endoscope every time? The CDC recommends testing each flexible endoscope for leaks as part of each reprocessing cycle, and removing from use any scope that fails (Rutala et al., 2008).

Can I autoclave a flexible endoscope? Flexible endoscopes are generally heat-sensitive, so they’re typically cleaned and high-level disinfected, or sterilized by a low-temperature method the manufacturer approves (Rutala et al., 2008). Don’t autoclave one unless the manufacturer says it’s safe.

What does high-level disinfection mean? The CDC says it can be expected to destroy all microorganisms, although when high numbers of bacterial spores are present, a few spores might survive (Rutala et al., 2008).

Why does drying matter so much? The CDC identifies drying as essential to greatly reduce the chance of recontamination by waterborne organisms, which is why it recommends an alcohol rinse and forced air before storage (Rutala et al., 2008).

How should I store an endoscope? In a way that protects it from damage and contamination and promotes drying. The CDC gives hanging it vertically as an example (Rutala et al., 2008).

Does an automated reprocessor replace manual cleaning? No. The CDC says cleaning is necessary before both manual and automated disinfection (Rutala et al., 2008).

What if the scope and reprocessor instructions disagree? The CDC advises comparing the two sets of instructions and resolving any conflict by contacting both manufacturers (Rutala et al., 2008).

Is there a veterinary standard for reprocessing? We didn’t find a national standard written for veterinary practice. The CDC guideline is a useful benchmark, your scope’s instructions for use govern, and your provincial regulator may have requirements of its own.


References

American Animal Hospital Association. (n.d.). Sterilization methods in vet med: Not one size fits all. Trends Magazine. Retrieved November 14, 2026, from https://www.aaha.org/trends-magazine/publications/sterilization-methods-in-vet-med-not-one-size-fits-all/

Rutala, W. A., Weber, D. J., & Healthcare Infection Control Practices Advisory Committee. (2008). Guideline for disinfection and sterilization in healthcare facilities, 2008 (Last update: May 2019). Centers for Disease Control and Prevention. https://www.cdc.gov/infection-control/media/pdfs/guideline-disinfection-h.pdf